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dc.contributor.authorDereeper, A.
dc.contributor.authorBocs, S.
dc.contributor.authorRouard, M.
dc.contributor.authorGuignon, V.
dc.contributor.authorRavel, S.
dc.contributor.authorTranchant-Dubreuil, C.
dc.contributor.authorPoncet, V.
dc.contributor.authorGarsmeur, O.
dc.contributor.authorLashermes, P.
dc.contributor.authorDroc, G.
dc.date.accessioned2015-05-13T13:59:47Z
dc.date.available2015-05-13T13:59:47Z
dc.date.issued2015
dc.identifier.citationDereeper, A.; Bocs, S.; Rouard, M.; Guignon, V.; Ravel, S.; Tranchant-Dubreuil, C.; Poncet, V.; Garsmeur, O.; Lashermes, P.; Droc, G. (2015) The coffee genome hub: a resource for coffee genomes. Nucleic Acids Research 43 (D1): D1028-D1035. ISSN: 0305-1048
dc.identifier.issn0305-1048
dc.identifier.urihttp://hdl.handle.net/10568/66031
dc.description.abstractThe whole genome sequence of Coffea canephora, the perennial diploid species known as Robusta, has been recently released. In the context of the C. canephora genome sequencing project and to support post-genomics efforts, we developed the Coffee Genome Hub (http://coffee-genome.org/), an integrative genome information system that allows centralized access to genomics and genetics data and analysis tools to facilitate translational and applied research in coffee. We provide the complete genome sequence of C. canephora along with gene structure, gene product information, metabolism, gene families, transcriptomics, syntenic blocks, genetic markers and genetic maps. The hub relies on generic software (e.g. GMOD tools) for easy querying, visualizing and downloading research data. It includes a Genome Browser enhanced by a Community Annotation System, enabling the improvement of automatic gene annotation through an annotation editor. In addition, the hub aims at developing interoperability among other existing South Green tools managing coffee data (phylogenomics resources, SNPs) and/or supporting data analyses with the Galaxy workflow manager.
dc.format.extentD1028-D1035
dc.publisherOUP
dc.relation.ispartofseriesNucleic Acids Research 43 (D1)
dc.sourceNucleic Acids Research
dc.subjectCOFFEA
dc.subjectCOFFEA CANEPHORA
dc.subjectDATA
dc.subjectDATA ANALYSIS
dc.subjectGENOMES
dc.subjectINFORMATION SYSTEMS
dc.titleThe coffee genome hub: a resource for coffee genomes
dc.description.versionPeer-reviewed
dc.typeJournal Article
cg.subject.bioversityDATA
cg.subject.bioversityDATA ANALYSIS
cg.subject.bioversityGENOMES
cg.subject.bioversityINFORMATION SYSTEMS
cg.identifier.statusOpen Access
cg.contributor.affiliationBioversity International
cg.identifier.doihttps://dx.doi.org/10.1093/nar/gku1108
cg.identifier.dataurlhttps://dx.doi.org/10.7910/DVN/ZFQM2U
cg.isijournalISI Journal
cg.contributor.crpROOTS, TUBERS AND BANANAS


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